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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18815277_18815593_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18815277 - 18815593
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCTGC
5'SS Class:
major
3'SS Sequence:
ACTTTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
TCTTCTCTACTT
Flanking Amino Acid:
QELHAMVQEKGVNSFMVYMA
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
57.9
42.1
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
74.7
0.56
0.8
69.7
30.5
Minor 5ss
46.6
-0.3
2.5
60
44.6
Minor BPS
54
0.2
1.9
75.83
41.7

Associated Gene:

Gene:
DPYSL3
Ensembl Gene ID:
ENSAPLG00000010132
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032944
18805079 - 18823209
18131
ENSAPLT00000022473
18804976 - 18838086
33111
ENSAPLT00000010677
18805079 - 18836620
31542
ENSAPLT00000033133
18805079 - 18838086
33008