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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18815759_18817873_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18815759 - 18817873
Intron Length:
2115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TGTCCCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TTGTTCACAGCT
Flanking Amino Acid:
AALAGGTTMIMDHVVPEPES
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
65.2
34.5
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
77.2
0.61
0.8
70.2
30.7
Minor 5ss
29.7
-2.3
3.1
38.1
40.6
Minor BPS
48
-0
2
72.95
43.8

Associated Gene:

Gene:
DPYSL3
Ensembl Gene ID:
ENSAPLG00000010132
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033133
18805079 - 18838086
33008
ENSAPLT00000032944
18805079 - 18823209
18131
ENSAPLT00000022473
18804976 - 18838086
33111
ENSAPLT00000010677
18805079 - 18836620
31542