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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18818059_18819770_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18818059 - 18819770
Intron Length:
1712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTGGTCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTGCCTCACCA
Flanking Amino Acid:
ADIYMEDGLIKQIGDNLIVP
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
66.1
0.36
1
63.5
42.8
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
52.7
0.08
2
68.35
43.9

Associated Gene:

Gene:
DPYSL3
Ensembl Gene ID:
ENSAPLG00000010132
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032944
18805079 - 18823209
18131
ENSAPLT00000022473
18804976 - 18838086
33111
ENSAPLT00000010677
18805079 - 18836620
31542
ENSAPLT00000033133
18805079 - 18838086
33008