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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18819860_18822984_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18819860 - 18822984
Intron Length:
3125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
TARHGLAGDTSDRLLIKGGR
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
63.5
42.9
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
84.8
0.78
0.7
79.7
25.7
Minor 5ss
29.9
-2.3
3.5
39.9
46.1
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
DPYSL3
Ensembl Gene ID:
ENSAPLG00000010132
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032944
18805079 - 18823209
18131