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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18819860_18836449_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18819860 - 18836449
Intron Length:
16590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTACGACAG
5'SS Class:
weak_major
3'SS Sequence:
TTTCCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
YNFQVQECPRSDRLLIKGGR
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.22
1.1
47.3
43.1
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
84.8
0.78
0.7
79.7
25.7
Minor 5ss
31.5
-2.1
3.3
35.2
42
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
DPYSL3
Ensembl Gene ID:
ENSAPLG00000010132
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010677
18805079 - 18836620
31542