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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18819860_18837888_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18819860 - 18837888
Intron Length:
18029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGCTA
5'SS Class:
major
3'SS Sequence:
TTTCCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
MSDRLLIKGGR
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.7
40.9
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
84.8
0.78
0.7
79.7
25.7
Minor 5ss
33.8
-1.8
3.5
43.8
45.8
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
DPYSL3
Ensembl Gene ID:
ENSAPLG00000010132
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022473
18804976 - 18838086
33111
ENSAPLT00000033133
18805079 - 18838086
33008