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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18865730_18872838_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18865730 - 18872838
Intron Length:
7109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTCT
5'SS Class:
major
3'SS Sequence:
GTTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
KRQIKDLEEKST*
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.5
38.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
83.7
0.76
0.8
82.1
34.6
Minor 5ss
37.8
-1.4
3
51.1
45.4
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023420
18865721 - 18912631
46911