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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18872905_18873959_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18872905 - 18873959
Intron Length:
1055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTTTTTAATT
Flanking Amino Acid:
RMELLQQAHQRIRDLEDKTD
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.4
0.82
0.8
78
40.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
78.6
0.98
1
86.64
33.8

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000019017
18872590 - 18912631
40042
ENSAPLT00000012002
18871209 - 18912631
41423
ENSAPLT00000023420
18865721 - 18912631
46911