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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18877201_18878089_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18877201 - 18878089
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCTAT
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
KQLDILGDNGNLRNEEQVAI
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.2
30.6
Major BPS
48.5
-0
1.4
47.8
45.7
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
39.1
-1.2
2.8
40.8
45.4
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012002
18871209 - 18912631
41423
ENSAPLT00000023420
18865721 - 18912631
46911
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000019017
18872590 - 18912631
40042