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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18878576_18879725_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18878576 - 18879725
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACAAAT
5'SS Class:
major
3'SS Sequence:
AATTAATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTCTTCTGAATT
Flanking Amino Acid:
LLEFRNLELEERERRSPPFN
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
76.8
33.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.8
0.58
1
71.1
43.3
Minor 5ss
35.2
-1.7
3.1
48.5
47.2
Minor BPS
65.6
0.57
1.4
77.06
39.7

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012002
18871209 - 18912631
41423
ENSAPLT00000023420
18865721 - 18912631
46911
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000019017
18872590 - 18912631
40042