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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18881456_18881741_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18881456 - 18881741
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCATCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAACA
Flanking Amino Acid:
LEKTLAQKGQDSHWVEDKQL
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.7
0.49
0.9
66.3
34.2
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
74
0.75
1.3
81.11
33.7

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000019017
18872590 - 18912631
40042
ENSAPLT00000012002
18871209 - 18912631
41423
ENSAPLT00000023420
18865721 - 18912631
46911