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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18883520_18885601_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18883520 - 18885601
Intron Length:
2082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
AGATTCAGAAAT
Flanking Amino Acid:
RNKRSSKPIKRHVVDTVFGY
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
86.1
0.81
0.6
85.4
21.9
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
46.7
-0.1
1.8
63.65
39.4

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023420
18865721 - 18912631
46911
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000019017
18872590 - 18912631
40042
ENSAPLT00000012002
18871209 - 18912631
41423