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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18885659_18886750_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18885659 - 18886750
Intron Length:
1092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGTCCA
5'SS Class:
major
3'SS Sequence:
TCTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AACTTTTTAATC
Flanking Amino Acid:
QQNIIDELTRDREKLIRRRR
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
62.7
43.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.2
0.86
0.7
80.5
36.7
Minor 5ss
33
-1.9
3
33.6
41.5
Minor BPS
65.3
0.46
1.2
64.86
35.1

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023420
18865721 - 18912631
46911
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000019017
18872590 - 18912631
40042
ENSAPLT00000012002
18871209 - 18912631
41423