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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18888837_18890795_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18888837 - 18890795
Intron Length:
1959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGTGTGAG
5'SS Class:
major
3'SS Sequence:
ATTATCAATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CAATTATTAATT
Flanking Amino Acid:
TLLVDERNELLKRVREAEKQ
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62.8
37.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71.8
0.49
1
68.2
41.8
Minor 5ss
32.8
-2
3.1
35.9
42.5
Minor BPS
59
0.36
1.6
70.77
40.2

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023420
18865721 - 18912631
46911
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000019017
18872590 - 18912631
40042
ENSAPLT00000012002
18871209 - 18912631
41423