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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18892003_18893390_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18892003 - 18893390
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTTTCTCATCA
Flanking Amino Acid:
WESERDIRRLMDEIKAKDRI
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
70
40.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
86.1
0.81
0.8
86.6
26.1
Minor 5ss
32.6
-2
2.5
35.7
34.2
Minor BPS
63.8
0.43
1.8
79.26
37.1

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012002
18871209 - 18912631
41423
ENSAPLT00000023420
18865721 - 18912631
46911
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000019017
18872590 - 18912631
40042