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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18893889_18897359_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18893889 - 18897359
Intron Length:
3471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGTCTCAACT
Flanking Amino Acid:
QIELHQEKSKVAKLEREKTQ
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
65.5
0.35
0.9
63.8
37
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
70.2
0.71
1.6
87.74
37.8

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023420
18865721 - 18912631
46911
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000012002
18871209 - 18912631
41423