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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18897630_18912545_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18897630 - 18912545
Intron Length:
14916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TTATTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TATGTCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.5
42.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
84.9
0.78
0.8
80.3
31.5
Minor 5ss
34.8
-1.7
2.9
43.9
43.7
Minor BPS
60.1
0.4
1.7
76.26
41

Associated Gene:

Gene:
JAKMIP2
Ensembl Gene ID:
ENSAPLG00000011443
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020431
18872590 - 18912631
40042
ENSAPLT00000019017
18872590 - 18912631
40042
ENSAPLT00000012002
18871209 - 18912631
41423
ENSAPLT00000023420
18865721 - 18912631
46911