About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18919240_18920113_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18919240 - 18920113
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GTTCCAGTGACC
Flanking Amino Acid:
VEKMALVKLAKLHEQLNESE
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
47.3
-0.2
2.3
65.67
39.7

Associated Gene:

Gene:
CDC23
Ensembl Gene ID:
ENSAPLG00000012078
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039004
18914569 - 18928283
13715
ENSAPLT00000012623
18914569 - 18927790
13222