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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18920176_18920476_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18920176 - 18920476
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGTAT
U12 Branch Point Sequence:
TGTTCTTTGACA
Flanking Amino Acid:
KLNQLVEAKKCYWRAYAVGD
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
59.2
0.23
1.4
61.1
45.5
Major PPT
79.3
0.66
1
76
38
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
79.8
0.93
1
83.15
30.6

Associated Gene:

Gene:
CDC23
Ensembl Gene ID:
ENSAPLG00000012078
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012623
18914569 - 18927790
13222
ENSAPLT00000039004
18914569 - 18928283
13715