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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18920553_18921435_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18920553 - 18921435
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
LYYYRRAHQLRPNDSRMLVA
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.7
43.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
38.3
-1.3
3.7
54.5
49.7
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
CDC23
Ensembl Gene ID:
ENSAPLG00000012078
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039004
18914569 - 18928283
13715
ENSAPLT00000012623
18914569 - 18927790
13222