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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18921556_18921709_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18921556 - 18921709
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCACTC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
KNTSAAIQAYRHAIEVNKRD
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
62.5
42.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
85.8
0.81
0.9
83.7
31.3
Minor 5ss
48.2
-0.2
2.9
68.4
42.5
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
CDC23
Ensembl Gene ID:
ENSAPLG00000012078
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039004
18914569 - 18928283
13715
ENSAPLT00000012623
18914569 - 18927790
13222