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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18921864_18922436_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18921864 - 18922436
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CTTTTTGCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAAAT
Flanking Amino Acid:
KYRVETCCVIGNYYSLRSQH
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.3
0.73
0.8
81.3
30.8
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
68.9
0.67
1.5
84.9
34.8

Associated Gene:

Gene:
CDC23
Ensembl Gene ID:
ENSAPLG00000012078
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039004
18914569 - 18928283
13715
ENSAPLT00000012623
18914569 - 18927790
13222