Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18923121_18924697_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18923121 - 18924697

Intron Length:

1577

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAATGTT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCTTGCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

TGATTATCATCT

Flanking Amino Acid:

LCNLITDKEMLKFLSLPDTW

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

80.3

32.2

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

74.9

0.56

41.4

Minor 5ss

38.1

-1.3

3.5

54.6

Minor BPS

46.4

-0.1

67.13

Associated Gene:

Gene:

CDC23

Ensembl Gene ID:

ENSAPLG00000012078

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012623

18914569 - 18927790

13222

ENSAPLT00000039004

18914569 - 18928283

13715