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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18927596_18927674_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18927596 - 18927674
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TGTCTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
GCTGTCTCCACG
Flanking Amino Acid:
RERGLQHSGKWASELAFALE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
62
37
Major BPS
57.1
0.18
1.1
59
36
Major PPT
71.8
0.49
0.9
66.4
34.7
Minor 5ss
32.3
-2
3.3
39.1
40.7
Minor BPS
43.5
-0.6
2.1
47.31
45.9

Associated Gene:

Gene:
CDC23
Ensembl Gene ID:
ENSAPLG00000012078
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012623
18914569 - 18927790
13222