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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18954740_18955044_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18954740 - 18955044
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCCTTTTCATTT
Flanking Amino Acid:
STSLASEMSQVAEVKTHQET
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
91.1
28.1
Major BPS
100
1.24
0.5
100
0
Major PPT
79.9
0.67
0.8
73.3
36.8
Minor 5ss
40.6
-1.1
3.1
59.8
44.7
Minor BPS
47.5
-0.1
1.7
62.54
42.9

Associated Gene:

Gene:
GFRA3
Ensembl Gene ID:
ENSAPLG00000012646
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013170
18954605 - 18963005
8401