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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18955176_18955970_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18955176 - 18955970
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TCTTGCTTTACT
Flanking Amino Acid:
LSMFESNKCLENTIWSQMHQ
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
85.2
0.79
0.8
79.2
32.9
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
63.7
0.51
2.1
84
43

Associated Gene:

Gene:
GFRA3
Ensembl Gene ID:
ENSAPLG00000012646
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013170
18954605 - 18963005
8401