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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18956106_18957212_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18956106 - 18957212
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GGGTTTGGGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TAAATCTTGATT
Flanking Amino Acid:
ACLQAYMGMIGTPMTPNYIS
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
54
0.09
1.2
49.1
48.1
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
62.7
0.48
1.3
72.9
37.9

Associated Gene:

Gene:
GFRA3
Ensembl Gene ID:
ENSAPLG00000012646
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013170
18954605 - 18963005
8401