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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18957747_18958174_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18957747 - 18958174
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTGGCTTTATA
Flanking Amino Acid:
DYNELAALLSGSQLAGDATN
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79
0.65
0.9
72.9
37.5
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
51.4
0.04
2.2
70.72
41.9

Associated Gene:

Gene:
GFRA3
Ensembl Gene ID:
ENSAPLG00000012646
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013170
18954605 - 18963005
8401