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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18959242_18962805_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18959242 - 18962805
Intron Length:
3564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAACAGCG
5'SS Class:
major
3'SS Sequence:
CCTGCTTGACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CTTGACTGAAAT
Flanking Amino Acid:
LLLGLLLSRAGDLLSLPRSD
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.2
54.7
42.9
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
64.7
0.33
1
57.9
42
Minor 5ss
36.8
-1.5
3.4
49.1
46.6
Minor BPS
49.7
0.06
1.9
71.24
45

Associated Gene:

Gene:
GFRA3
Ensembl Gene ID:
ENSAPLG00000012646
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013170
18954605 - 18963005
8401