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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18964397_18976565_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18964397 - 18976565
Intron Length:
12169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTT
5'SS Class:
major
3'SS Sequence:
ACTTTCTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ACTTTCTTAATA
Flanking Amino Acid:
EDLLDLTVVAGIRPPLVNGP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.9
44.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.9
0.54
0.9
70.3
34.5
Minor 5ss
35
-1.7
3.8
55.9
48.3
Minor BPS
76.8
0.84
1.1
76.94
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013236
18963406 - 18983238
19833