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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18976957_18979152_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18976957 - 18979152
Intron Length:
2196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGGTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTTATATGAACT
Flanking Amino Acid:
NVDIKSAAELGIAVCNIPSS
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
75.4
0.57
0.9
69.5
41.6
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
53.5
0.19
1.8
74.63
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013236
18963406 - 18983238
19833