About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18979360_18979987_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18979360 - 18979987
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
CTTTCCTTGATG
Flanking Amino Acid:
RGETLGIIGLGRVGQAVALR
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
75.3
0.57
1.1
78.5
33.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
75.6
0.66
1.3
74.24
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013236
18963406 - 18983238
19833