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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18980203_18980975_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18980203 - 18980975
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGCAG
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TCTTTATCAACC
Flanking Amino Acid:
HLINDFTIKQMRQGCFLVNT
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.1
50
42.3
Major BPS
79
0.72
1
80.3
31.7
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
22.9
-3.1
3.2
28.6
43.7
Minor BPS
58.1
0.23
1.8
71.42
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013236
18963406 - 18983238
19833