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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_18982076_18983066_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18982076 - 18983066
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTAATTAATG
Flanking Amino Acid:
HPELNGAAAYRFPPGVVGVA
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76
0.59
1
72.6
42.4
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
52.6
-0
1.8
60.12
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013236
18963406 - 18983238
19833