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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19002469_19002926_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19002469 - 19002926
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGGT
5'SS Class:
major
3'SS Sequence:
TTGTTGTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTATATTAAAA
Flanking Amino Acid:
SDASGLRLFQMGTESQNQIL
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
70.7
39.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75.8
0.58
1.1
72.9
42.2
Minor 5ss
40.6
-1.1
3.2
58.8
45.7
Minor BPS
60.2
0.32
1.7
74.64
36.1

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622