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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19004696_19006019_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19004696 - 19006019
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
GCATAAAAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
ACCTCCTCAATA
Flanking Amino Acid:
TRLMEVSVTESGEIKSVDPR
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
70.2
0.5
1
72.1
33
Major PPT
48.4
-0
1
42.8
41
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
62.3
0.38
1.6
65.69
41.3

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622