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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19006089_19007035_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19006089 - 19007035
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAG
U12 Branch Point Sequence:
TTCTGTTTAGTG
Flanking Amino Acid:
VVMDNTSPSEGGGLKAAKSS
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
57.4
0.18
1.6
57.4
49.1
Major PPT
77.8
0.63
0.9
73.4
37.1
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
48.8
-0.2
2
58.32
44.5

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622