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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19007615_19011377_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19007615 - 19011377
Intron Length:
3763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGCTTTTTAATT
Flanking Amino Acid:
KTNRSQAQGENSRNSLLASS
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.7
0.69
0.9
77.7
40.7
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
72.1
0.77
1.1
79.54
37.3

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622