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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19012624_19013283_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19012624 - 19013283
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAGCT
5'SS Class:
major
3'SS Sequence:
TTGCCTCACCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTGCCTCACCC
Flanking Amino Acid:
KGRPRTAPLKVGQSVLKDMS
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
70.5
33.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.1
0.45
0.9
62.4
38.8
Minor 5ss
27.7
-2.6
3.3
39.7
45.7
Minor BPS
58
0.23
2
74.56
42.5

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622