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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19016233_19018273_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19016233 - 19018273
Intron Length:
2041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTTAATAAAT
Flanking Amino Acid:
YRLRKNRPRSETEEIGDEEV
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82
0.72
0.9
73.7
40.6
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
50.5
0.09
2
75.15
41.1

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622