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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19018382_19018469_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19018382 - 19018469
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAAGTCTAAACT
Flanking Amino Acid:
LMPTQIIPGTALYNIGDMVH
Intron Amino Acid Position:
988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76
0.59
0.9
66.8
43
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
53
0.17
1.8
67.86
42.8

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622