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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19021219_19022549_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19021219 - 19022549
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TTACATCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGAAACTTACCT
Flanking Amino Acid:
FPPVFSAASTGAKGKASLPN
Intron Amino Acid Position:
1210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.7
38.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74.8
0.56
0.9
66.5
40.1
Minor 5ss
38.5
-1.3
3.5
56.2
48
Minor BPS
52.9
0.17
1.9
71.9
44.1

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622