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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19031419_19034208_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19031419 - 19034208
Intron Length:
2790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAAATTTTAATA
Flanking Amino Acid:
DFWDGFEIISKRLRSDDGQP
Intron Amino Acid Position:
1356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.1
0.75
0.9
77
36.7
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
62.6
0.39
1.2
65.6
34.6

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622