About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19034300_19034384_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19034300 - 19034384
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
GEDFRDMMPTRFEDLMENLP
Intron Amino Acid Position:
1386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
78.2
0.63
0.8
70.1
36.5
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622