About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19034516_19037438_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19034516 - 19037438
Intron Length:
2923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
CACTATTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
DLGPKMYNAYGLITAEDRRV
Intron Amino Acid Position:
1430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.7
38.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.4
0.55
0.9
68.3
36.8
Minor 5ss
38.3
-1.3
3.1
45
44.5
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622