About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19037559_19038038_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19037559 - 19038038
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
ATTCCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCATGTGGATT
Flanking Amino Acid:
IPIGEGTHDDEVLKTIDEGD
Intron Amino Acid Position:
1470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.1
36.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
81.7
0.71
0.8
78
30
Minor 5ss
42.9
-0.8
3.4
61.4
45.4
Minor BPS
43.7
-0.4
2.1
63.42
41.5

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622