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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19038712_19039223_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19038712 - 19039223
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGTATTAATT
Flanking Amino Acid:
VFIPAGAPHQVHNLYSCIKV
Intron Amino Acid Position:
1576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.6
0.53
1
65.8
45.3
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
66.3
0.59
1.7
84.39
36.6

Associated Gene:

Gene:
KDM3B
Ensembl Gene ID:
ENSAPLG00000012954
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013524
18989508 - 19042129
52622