Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19054938_19056509_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19054938 - 19056509

Intron Length:

1572

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTCT

U12 Branch Point Sequence:

CTCTCCTTCTCT

Flanking Amino Acid:

AETLTDIVLSWFPFYFELKI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.7

31.8

Major BPS

33.2

-1

4.2

59.6

46.8

Major PPT

85.1

0.79

0.7

83.9

24.3

Minor 5ss

31.7

-2.1

2.6

35.1

34.5

Minor BPS

44.4

-0.3

3.6

75.16

47.6

Associated Gene:

Gene:

REEP2

Ensembl Gene ID:

ENSAPLG00000013090

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013639

19054870 - 19057879

3010