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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_19057297_19057699_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19057297 - 19057699
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TATGTCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCACCATAATT
Flanking Amino Acid:
ANAAVTAAAKGQGVLSEKLR
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73
0.52
0.8
70.5
35.9
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
65.6
0.57
1.7
81.74
39.8

Associated Gene:

Gene:
REEP2
Ensembl Gene ID:
ENSAPLG00000013090
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013639
19054870 - 19057879
3010