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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_193479_193928_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193479 - 193928
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCTGGGGCAACT
Flanking Amino Acid:
DIRAHLQQKQLPGLDLEGLF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
84.5
0.78
0.8
82.1
29.9
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
35.5
-1
2.8
59.08
50

Associated Gene:

Gene:
ARHGEF37
Ensembl Gene ID:
ENSAPLG00000010419
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010863
193261 - 201827
8567